@TOME V2.2
(Nov 2016)
Ref.
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CTL3_HUMAN: (2015-12-07 )
MHCLGAEYLVSAEGAPRQREWRPQIYRKCTDTAWLFLFFLFWTGLVFIMGYSVVAGAAGRLLFGYDSFGNMCGKKNSPVEGAPLSGQDMTLKKHVFFMNSCNLEVKGTQLNRMALCVSNCPEEQLDSLEEVQFFANTSGSFLCVYSLNSFNYTHSPKADSLCPRLPVPPSKSFPLFNRCVPQTPECYSLFASVLINDVDTLHRILSGIMSGRDTILGLCILALALSLAMMFTFRFITTLLVHIFISLVILGLLFVCGVLWWLYYDYTNDLSIELDTERENMKCVLGFAIVSTGITAVLLVLIFVLRKRIKLTVELFQITNKAISSAPFLLFQPLWTFAILIFFWVLWVAVLLSLGTAGAAQVMEGGQVEYKPLSGIRYMWSYHLIGLIWTSEFILACQQMTIAGAVVTCYFNRSKNDPPDHPILSSLSILFFYHQGTVVKGSFLISVVRIPRIIVMYMQNALKEQQHGALSRYLFRCCYCCFWCLDKYLLHLNQNAYTTTAINGTDFCTSAKDAFKILSKNSSHFTSINCFGDFIIFLGKVLVVCFTVFGGLMAFNYNRAFQVWAVPLLLVAFFAYLVAHSFLSVFETVLDALFLCFAVDLETNDGSSEKPYFMDQEFLSFVKRSNKLNNARAQQDKHSLRNEEGTELQAIVR
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370......---------.380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500...-....510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MHCLG
A
E
Y
L
VSAEGAPRQ
R
E
W
R
P
Q
I
Y
R
K
CT
D
T
A
W
L
F
L
F
F
L
F
W
T
G
L
V
F
I
M
G
Y
S
V
V
AGAAG
R
L
L
F
GY
D
S
F
G
N
MCGKKNSPVEGAPLSGQD
M
T
L
K
K
H
V
F
F
M
NSC
N
L
E
V
KGTQ
L
N
R
M
A
L
C
V
SNC
P
E
E
Q
L
D
S
L
E
E
V
Q
F
FANTSG
S
F
L
C
V
Y
S
LNSFNYTHSPKADSLCPRLPVPPSKSF
P
L
F
N
RCVPQTP
E
C
Y
S
L
F
A
S
V
L
IN
D
V
D
T
L
H
R
I
L
S
G
I
MSG
R
D
T
I
L
G
L
C
I
L
A
L
A
L
S
L
A
M
M
F
T
F
R
F
I
T
T
L
L
V
H
I
F
I
S
L
V
I
L
G
L
L
F
V
C
G
V
L
W
W
L
Y
YDYTN
D
L
S
I
E
L
DTEREN
M
K
C
V
L
G
F
A
I
V
S
T
G
I
T
A
V
L
L
V
L
I
F
V
L
R
K
R
I
K
L
T
V
E
L
F
Q
I
T
N
K
A
ISSA
P
F
L
L
F
Q
P
L
W
T
F
A
I
L
I
F
F
W
V
L
W
V
A
V
L
L
SLGT
A
G
A
A
Q
V
MEGG
Q
V
E
Y
KPLS
G
I
R
Y
---------
M
W
S
Y
H
L
I
G
L
I
W
T
S
E
F
I
L
A
C
Q
Q
M
TI
A
G
A
V
V
T
C
Y
F
NRSKNDPPD
H
P
I
L
S
S
L
S
I
L
F
F
YHQ
G
T
V
VK
G
S
F
L
I
S
V
V
R
I
P
R
I
I
V
M
Y
M
Q
N
A
L
K
E
Q
Q
H
G
A
L
S
R
Y
L
F
R
C
C
Y
C
C
F
W
C
L
D
K
Y
L
L
H
LNQNA
Y
T
T
T
AINGT-DFCT
S
A
K
D
A
F
K
I
L
SKNSSH
F
T
S
I
N
C
F
G
D
F
I
I
F
L
G
K
V
L
V
V
C
F
T
V
F
G
G
L
M
A
FNYNRA
F
Q
V
W
A
V
P
L
L
L
V
A
F
F
A
Y
L
V
A
H
S
F
L
S
V
F
E
T
V
L
D
A
L
F
L
C
F
A
V
D
L
ETNDGSSEK
P
Y
FM
D
Q
E
F
L
S
F
V
K
RSNKLNN
A
R
A
Q
Q
D
K
H
SLRNEEGT
E
L
Q
A
IVR
5
PsiBlast_PDB
90.67
32%
131
- C7 -
4U1H
6
1B07_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
12
PsiBlast_PDB
88.54
32%
134
- C7 -
4U1S
4
1B81_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
10
PsiBlast_PDB
88.52
32%
130
- C7 -
4U1M
8
1B42_HUMAN
A:
[22-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
7
PsiBlast_PDB
87.83
32%
129
- C7 -
4U1I
1
1B81_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
11
PsiBlast_PDB
87.47
32%
126
- C7 -
4U1N
4
1B42_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
8
PsiBlast_PDB
85.92
32%
126
- C7 -
4U1J
1
1B42_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
4
PsiBlast_PDB
84.99
32%
133
- C7 -
3VCL
4
1B07_HUMAN
A:
[22-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
6
PsiBlast_PDB
84.78
32%
144
- C7 -
4U1K
6
1B07_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
9
PsiBlast_PDB
84.63
32%
130
- C7 -
4U1L
10
1B81_HUMAN
A:
[23-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
S
V
-
G
Y
V
D
D
T
Q
F
V
R
F
D
S
D
A
A
S
P
R
E
E
P
R
A
P
W
-
I
E
Q
E
G
P
E
Y
W
D
R
N
T
Q
I
Y
K
A
Q
A
Q
T
D
R
E
S
L
R
N
L
R
G
Y
Y
N
Q
S
E
A
G
2
PsiBlast_PDB
68.24
37%
119
- C7 -
2YNP
-
COPB2_YEAST
A:
[498-548]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
L
L
F
N
K
D
A
Y
L
E
A
A
N
N
G
N
I
D
D
S
E
G
V
D
E
A
F
D
V
L
Y
E
L
S
E
S
I
T
S
G
K
W
V
G
D
V
F
I
F
T
T
A
T
N
R
L
N
Y
F
V
G
G
K
T
Y
N
L
A
H
Y
T
K
E
M
Y
L
L
G
Y
L
A
R
D
N
K
V
Y
L
A
D
R
E
V
H
V
Y
G
Y
E
I
S
L
---------------------------------------------------------------
1
PsiBlast_PDB
63.24
37%
83
- C7 -
3MKQ
-
?
A:
[498-548]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
L
L
F
N
K
D
A
Y
L
E
A
A
N
N
G
N
I
D
D
S
E
G
V
D
E
A
F
D
V
L
Y
E
L
S
E
S
I
T
S
G
K
W
V
G
D
V
F
I
F
T
T
A
T
N
R
L
N
Y
F
V
G
G
K
T
Y
N
L
A
H
Y
T
K
E
M
Y
L
L
G
Y
L
A
R
D
N
K
V
Y
L
A
D
R
E
V
H
V
Y
G
Y
E
I
S
L
E
V
L
E
F
Q
T
L
T
L
R
G
E
I
E
E
A
I
E
N
V
L
P
N
V
E
G
K
D
S
L
T
K
I
A
R
F
L
E
G
Q
E
Y
Y
E
E
A
L
N
I
S
P
D
Q
D
Q
K
F
E
L
A
L
K
30
Fugue
61.54
19%
436
* C7 *
1A2X
-
TNNI2_RABIT
B:
[3-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
K
R
N
R
A
I
T
A
R
R
Q
H
L
K
S
V
M
L
Q
I
A
A
T
E
L
E
K
E
E
---------
28
Fugue
60.20
27%
335
- C7 -
3ZIA
-
ATIF_YEAST
J:
[1-36]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
G
S
T
G
T
P
R
G
S
G
S
E
D
-
S
F
V
K
R
A
R
A
T
E
D
F
F
V
R
Q
R
E
K
E
Q
-------------
3
PsiBlast_PDB
56.97
33%
-16
- C7 -
1FFT
2
CYOB_ECOLI
A:
[146-199]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
W
F
T
V
V
G
V
I
L
V
N
V
S
L
G
V
G
E
F
A
Q
T
G
W
L
A
Y
P
P
L
S
G
I
E
Y
SPGVGV
D
Y
W
I
W
S
L
Q
L
S
G
I
G
T
T
L
T
G
I
N
F
F
V
T
I
L
K
M
R
A
P
G
M
T
M
F
K
M
P
V
F
T
W
A
S
L
C
A
N
V
L
I
I
A
S
F
P
I
L
T
V
T
V
A
L
L
T
L
D
R
Y
L
G
T
H
F
F
T
N
D
M
G
G
N
M
M
M
Y
I
N
L
I
W
A
W
G
H
P
E
V
Y
I
L
I
L
P
V
F
G
V
F
S
E
I
A
A
T
F
S
R
K
R
L
F
G
Y
T
S
L
V
-
W
A
T
V
C
I
T
V
L
S
F
I
V
W
L
H
H
F
F
T
M
G
A
G
A
N
V
N
A
F
F
G
I
T
T
M
I
I
A
I
P
T
G
V
K
I
F
N
W
L
F
T
M
Y
Q
G
R
I
V
F
H
S
A
M
L
W
T
I
G
F
I
V
T
F
S
V
G
G
M
T
G
V
L
L
A
V
P
G
A
D
F
V
L
H
N
S
L
F
L
I
A
H
F
H
N
V
I
I
G
G
V
V
F
G
C
F
A
G
M
T
Y
W
W
P
K
A
F
G
F
K
L
N
E
T
W
G
K
R
A
F
W
F
W
I
I
G
F
F
13
PsiBlast_CBE
56.71
33%
-17
- C7 -
1FFT
2
CYOB_ECOLI
F:
[146-199]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
W
F
T
V
V
G
V
I
L
V
N
V
S
L
G
V
G
E
F
A
Q
T
G
W
L
A
Y
P
P
L
S
G
I
E
Y
SPGVGVDYW
I
W
S
L
Q
L
S
G
I
G
T
T
L
T
G
I
N
F
F
V
T
I
L
K
M
R
A
P
G
M
T
M
F
K
M
P
V
F
T
W
A
S
L
C
A
N
V
L
I
I
A
S
F
P
I
L
T
V
T
V
A
L
L
T
L
D
R
Y
L
G
T
H
F
F
T
N
D
M
G
G
N
M
M
M
Y
I
N
L
I
W
A
W
G
H
P
E
V
Y
I
L
I
L
P
V
F
G
V
F
S
E
I
A
A
T
F
S
R
K
R
L
F
G
Y
T
S
L
V
-
W
A
T
V
C
I
T
V
L
S
F
I
V
W
L
H
H
F
F
T
M
G
A
G
A
N
V
N
A
F
F
G
I
T
T
M
I
I
A
I
P
T
G
V
K
I
F
N
W
L
F
T
M
Y
Q
G
R
I
V
F
H
S
A
M
L
W
T
I
G
F
I
V
T
F
S
V
G
G
M
T
G
V
L
L
A
V
P
G
A
D
F
V
L
H
N
S
L
F
L
I
A
H
F
H
N
V
I
I
G
G
V
V
F
G
C
F
A
G
M
T
Y
W
W
P
K
A
F
G
F
K
L
N
E
T
W
G
K
R
A
F
W
F
W
I
I
G
F
F
27
Fugue
56.45
15%
313
- C7 -
3M91
-
ARC_MYCTU
A:
[52-96]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
R
D
I
H
Q
L
E
A
R
I
D
S
L
A
A
R
N
S
K
L
M
E
T
L
K
E
A
R
Q
Q
L
L
A
L
R
E
E
V
D
R
L
G
Q
--
33
Fugue
55.99
18%
366
- C7 -
1J5B
1
A:
[1-37]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
A
S
D
A
K
A
A
A
E
L
V
A
A
N
A
K
A
A
A
E
L
V
A
A
N
A
K
A
A
A
E
A
V
A
R
26
Fugue
51.66
20%
445
- C7 -
1M3W
-
?
A:
[2-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
G
E
I
W
K
L
H
E
E
F
L
K
K
F
E
E
L
L
K
L
H
E
E
R
L
K
K
M
N
H
---------------
32
Fugue
47.93
13%
358
- C7 -
4B7Y
-
MSL1_HUMAN
A:
[6-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
S
S
Q
A
A
C
L
K
Q
I
L
L
L
Q
L
D
L
I
E
Q
Q
Q
Q
Q
L
Q
A
K
E
K
E
I
E
E
L
K
----------
25
Fugue
41.33
36%
742
- C7 -
5A5B
-
?
Y:
[71-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
F
T
N
E
L
K
A
E
L
D
R
Y
K
R
E
N
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------