@TOME V2.2
(Nov 2016)

Ref. - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GDC_HUMAN: (2015-12-08 )
MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNHHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLGISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVKGEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQLGTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDL_A_3(2C3E)
ADT1_BOVIN
[Raw transfer]




CDL_A_3(1OKC)
ADT1_BOVIN
[Raw transfer]




4 PsiBlast_PDB 79.8429% -78 - C5 -4C9Q - ADT3_YEAST -
9 HHSearch 79.7130% -79 - C5 -1OKC 3.4 ADT1_BOVIN
18 Fugue 78.4428% -78 - C5 -1OKC - ADT1_BOVIN -
1 PsiBlast_PDB 77.7328% -82 - C5 -1OKC - ADT1_BOVIN -
2 PsiBlast_PDB 76.9428% -81 - C5 -2C3E 5.7 ADT1_BOVIN
5 PsiBlast_PDB 71.1528% -81 - C5 -4C9H - ADT2_YEAST -
3 PsiBlast_PDB 70.5629% -74 - C5 -4C9J - ADT3_YEAST -
22 Fugue 65.4017%-105 - C1 -4WID - ? -
23 Fugue 62.4315% -73 - C3 -3PVT - PAAA_ECOLI -
26 Fugue 59.1414% -87 * C4 *4US5 - ? -
8 HHSearch 57.6926% -67 - C5 -2LCK - UCP2_MOUSE -
6 PsiBlast_PDB 57.4826% -70 - C5 -2LCK - UCP2_MOUSE -
11 HHSearch 56.6724% -73 - C5 -1OKC - ADT1_BOVIN -
19 Fugue 56.6518% -81 * C3 *4PXG - T2S3_STAAU -
21 Fugue 56.2215% -79 - C2 -4K6L - ? -
27 Fugue 56.2016% -73 - C4 -4NNB - ? -
25 Fugue 55.8816% -69 - C4 -4NZR - Y281_MYCGE -
10 HHSearch 39.6623% -59 - C5 -2LCK - UCP2_MOUSE -
7 PsiBlast_PDB 28.7030% -4 - C5 -3PMI - MUM1_HUMAN -
20 Fugue 23.9329% 242 - C5 -4UI9 - ? -