Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYMKKLKFITLTLAIIITLPMLQSCLDDNDHQSRSLVI---STINQISEDSKEFYFTLDNGKTMFPSNSQAWGGEKFENGQRAFVIFNELEQPVNGYDYNIQVRDITKVLTKEIVTMDDEENTEEKIGDDKINATYMWISKDKK-----YLTIEFQYYSTHSEDKKHFLNLVINNKEADSAAENEDNTDDEYINLEFRHNSERDSPDHLGEGYVSFKLDKIEEQIEGKKGLNIRVRTLYDGIKNYKVQFP
4J8Q Chain:A ((6-198))-----------------------------DGYSLGDIAVDWATVRVVGGDT--YSLNADRWGTLWPA-ATAIPFYKPIDGQRVITYFNPLYDNYEGYDHAVKVEHNYNVLTKQVEDLTAE--NESEFGNDPV-----WVNKDMMWIGGGYLNVIFRQNL------KHLVSLVRDMRA--TAAEGE---DDGYIHLELRYKTYDD----QANGAVSFNLNSLD--LTGKKGIKVKLNSVKDG---------


General information:
TITO was launched using:
RESULT:

Template: 4J8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54864 for 1178 contacts (-46.6/contact) +
2D Compatibility (PS) -18673 + (NN) -4052 + (LL) 4312
1D Compatibility (HY) -12000 + (ID) 3000
Total energy: -88277.0 ( -74.94 by residue)
QMean score : 0.335

(partial model without unconserved sides chains):
PDB file : Tito_4J8Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J8Q-query.scw
PDB file : Tito_Scwrl_4J8Q.pdb: