Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTNKIIFIVFIVIFIGLSYRHFTNTDKARMEISSLSSIDVFKFNSFSKFSNDKIGVIYDEEKLSKFKVIMNSLDTSEGIK---KIEVPKDANIESFK-YSYHIQPNLKYVEDNNVYDGYFLLYILVGDSEGKSYIIFSGTELSYVLDKNNTNILKEIFLNVKKQQ
1DJ3 Chain:A ((336-441))
-------------------------------CDINGFSSLNLTKLDVLSGLPEIKLGVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIEELAGVPVHYIGVG--PGRDALIY----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18354 for 599 contacts (-30.6/contact) +
2D Compatibility (PS) -9924 + (NN) 9570 + (LL) 4776
1D Compatibility (HY) -6400 + (ID) 1500
Total energy: -21832.0 ( -36.45 by residue)
QMean score : 0.042
(partial model without unconserved sides chains):
PDB file :
Tito_1DJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DJ3-query.scw
PDB file :
Tito_Scwrl_1DJ3.pdb
: