Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEETN--ITGVTVPDSVI---------------------------SIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALKEITIPASVEKM-DNPFRWSNALDTVYMEGMVAPE
4GT6 Chain:A ((12-171))
---------------------------------GSYQFILNADNTATITKY---TGNEHRITIPAQVT-HGAYIYPVSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSV---
General information:
TITO was launched using:
RESULT:
Template:
4GT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93371 for 824 contacts (-113.3/contact) +
2D Compatibility (PS) -13639 + (NN) -1055 + (LL) 3680
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -116785.0 ( -141.73 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_4GT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GT6-query.scw
PDB file :
Tito_Scwrl_4GT6.pdb
: