Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRILSLLGVIALFLGVILVSCGNDDDNKNTTGVHKIVVEQSGNTDDFDLNIAFGAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSEQAGKKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVSTTSVE
2LRG Chain:A ((7-126))
--------------------------------TGIHKIVIQQSGDTDSFEVSVSIGGADKGGPAKLYNDKGEYIGDSYSA-QIRTATMSCCTNGNAFFMTCAGSVSSISE-AGKRLHITVIGYIDDKEVNRLEKEYITDGNTLIETFSVSTKEI-
General information:
TITO was launched using:
RESULT:
Template:
2LRG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48145 for 870 contacts (-55.3/contact) +
2D Compatibility (PS) -13321 + (NN) -6241 + (LL) 2232
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -81475.0 ( -93.65 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_2LRG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LRG-query.scw
PDB file :
Tito_Scwrl_2LRG.pdb
: