Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGVSYSDGHFLTKSGGVINFRKTRVTSITITILGNYGLR--------VVNGELQNTPLTFKGADFKSSTLKDELLIPLEGAVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA
1LV0 Chain:A ((108-172))
-------EGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFD-ENDPKTFEGVDPQNTSMRD----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7661 for 242 contacts (-31.7/contact) +
2D Compatibility (PS) -5922 + (NN) -1323 + (LL) 7188
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -10918.0 ( -45.12 by residue)
QMean score : 0.110
(partial model without unconserved sides chains):
PDB file :
Tito_1LV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LV0-query.scw
PDB file :
Tito_Scwrl_1LV0.pdb
: