Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF----GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDID---DRSALINFLKEAEIMAVFHYIPLHGCP-AGEHFGEFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 1MDX Chain:A ((11-379)) | -LPFSRPAMGAEELAAVKTVLDSGWIT-----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGL-------GRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADL-PFQPLSLPSWEH--IHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPD--TEWNSERICSLPLFPDMTESDFDRVITAL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236485 for 3063 contacts (-77.2/contact) +
2D Compatibility (PS) -38765 + (NN) -19006 + (LL) 608
1D Compatibility (HY) -19600 + (ID) 6350
Total energy: -319598.0 ( -104.34 by residue)
QMean score : 0.537
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