Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLSVDEVLTTTRSVRKRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANA----RGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDESAVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAY-TQGIDFRPAKRLPAESVTHWNGW
4DN2 Chain:A ((27-206))
--------EAIRTRRSVRKF--SDRPVEPEKLRAVLDAARLAPSWANMQCWRFVVVEDQATKVQISELSYVEAYFGPKGYKSNPA-----------------------QKALAEAPVVIIACGEPPQSGELRGQQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVF----DEQQLGELLGIP-AELRIVGLFPLGYPLEGPKAGPSRK-PLDEIVHYGKY
General information:
TITO was launched using:
RESULT:
Template:
4DN2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103128 for 1299 contacts (-79.4/contact) +
2D Compatibility (PS) -19471 + (NN) -13894 + (LL) 1748
1D Compatibility (HY) -10400 + (ID) 2900
Total energy: -148045.0 ( -113.97 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_4DN2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DN2-query.scw
PDB file :
Tito_Scwrl_4DN2.pdb
: