Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAFSRFTPLIQSLPASVPFVGPEALERQHGRKIAARIGANESGFGPAPSVLLAIRQAAGDTWK----YADPENHDLKQALARHLGTSPANIAIGEGIDGLLGQIVRLVVEAGAPVVTSLGGY--PTFNYHVAGHGGRLVTVPYADDRE-DLEGLLAAVG---RENAPLVYLANPDNPMGSWWPAERVVAFAQALPETTLLVLDEAYCETAPRDALPPIESLIDKPNVIRARTFSKAYGLAGARIGYTLSTPGTAQAFDKIRNHFGMSRIGVAAAIAALADQDYLKEVTLKIANSRQRIGRIAADSGLAPLPSATNFVAVD----CGK---DASYARAIVDRLMSD----HGIFIRMPGVAPLNRCIRISTAPDAEMDLLAAALPEVIRSLAAT |
| 3HDO Chain:A ((30-351)) | ------------------------------------KLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEI-----GYVHPSYSYY-----GTLAEVQGARVRTFGLTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRC--AGMLVLDETYAEFAESNAL---ELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVIPSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHG--------------MRISIGTREEMEQTLAALKEI------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149720 for 2496 contacts (-60.0/contact) +
2D Compatibility (PS) -32905 + (NN) -18997 + (LL) 4456
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -222466.0 ( -89.13 by residue)
QMean score : 0.421
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