Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQAL-HLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGA----YDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDREGSFYVYDVKVDD------RPAFHRKMEAAGIMAGLVSRRNDEHSCVAHLRT---------SLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 1MDX Chain:A ((10-379)) | -FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGER------YGIPVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGL---------GRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL-------HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222746 for 3002 contacts (-74.2/contact) +
2D Compatibility (PS) -36858 + (NN) -14631 + (LL) 1252
1D Compatibility (HY) -18400 + (ID) 5750
Total energy: -297133.0 ( -98.98 by residue)
QMean score : 0.475
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