Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVK-HNNIRD-----LVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSP
3S4W Chain:A ((420-518))
-----KLGANILLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYA----------------------PLILQNCSKVTETFDYLTFLPLQTVQGLLKAVQPLLKISMSMRDSLIL--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3S4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30815 for 597 contacts (-51.6/contact) +
2D Compatibility (PS) -9026 + (NN) 2131 + (LL) 5384
1D Compatibility (HY) -9200 + (ID) 1250
Total energy: -42776.0 ( -71.65 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_3S4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S4W-query.scw
PDB file :
Tito_Scwrl_3S4W.pdb
: