Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTYANRE---VLAHFFPSPGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKGR---VGLGVCTNRSTSMDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAPLPAAYRMEHHREIIDLLG
3KBB Chain:A ((2-178))
----------EAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPY----TEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALER-LRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGI--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KBB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94744 for 1261 contacts (-75.1/contact) +
2D Compatibility (PS) -19259 + (NN) -17868 + (LL) 2896
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -141475.0 ( -112.19 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_3KBB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KBB-query.scw
PDB file :
Tito_Scwrl_3KBB.pdb
: