Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTC-VGVSRWPVHDFNHR----TTSDMWLYRAYSGNLYHNGEQTLTLS---------SFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2V24 Chain:A ((66-188))
-------------------------------VGHARGLHAWQINWPARQRGTHAVVGVATARAPLHSVGYTALVGSDAESWGWDLGRSRLYHD----PGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAFRGLKGKKLYPVV-------------------
General information:
TITO was launched using:
RESULT:
Template:
2V24.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55408 for 676 contacts (-82.0/contact) +
2D Compatibility (PS) -11497 + (NN) -5168 + (LL) 1996
1D Compatibility (HY) -6800 + (ID) 1450
Total energy: -78327.0 ( -115.87 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_2V24.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V24-query.scw
PDB file :
Tito_Scwrl_2V24.pdb
: