Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKQISLPAKLINGGIAGLIGVTCVFPIDLAKTRLQNQQNGQRV-----YTSMSDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRH----QLSKDGQKLTLLKEMLA-GCGAGTCQVIVTTPMEMLKIQLQ-DAGRIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTRDLLRSRGIAGLYKGLGATLLRDVPFSVVYFPLFANLNQLGRPASEEKSPFYVSFLAGCVAGSAAAVAVNPCDVVKTRL--QSLQRGVNEDTYSGILDCARKILRHEGPSAFLKGAYCRALVIAPLFGIAQVVYFLGIAESLLGLLQDPQA |
| 1OKC Chain:A ((2-278)) | --DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT------------------------KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK--GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGA-DIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEI--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50274 for 1865 contacts (-27.0/contact) +
2D Compatibility (PS) -26953 + (NN) -2037 + (LL) 3476
1D Compatibility (HY) -15200 + (ID) 3700
Total energy: -94688.0 ( -50.77 by residue)
QMean score : 0.181
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