Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFSKLLEQAGGVGLFQTLQVLTFILPCLMIPSQMLLENFSAAIPGHRCWTHMLDNGSAVSTNMTPKALLTISIPPGPNQGPHQCRRFRQPQWQLLDPNATATSWSEADTEPCVDGWVYDRSVFTSTIVAKWDLVCSSQGLKPLSQSIFMS--------GILVGSFIWGLLSYRFGRKPMLSWCCLQLAVAGTSTI---------------------FAPTFVIYCGLRFVAAFGMAGIFLSSLTLMVEWTTTSRRAVTMTVVGCAFSAGQ----------AALGGLAFALRD-WRTLQLAASVPFFAISLISWWLPESARWLIIKGKPDQALQELRKVARINGHKEAKNLTIEVLMSSVKEEVASAKEPRSVLDLFCVPVL---RWRSCAMLVVNFSLLISYYGLVFDLQSLGRDIFLLQALF-GAVDFLGRATTALLLSFLGRRTIQ-AGSQAMA-GLAILANMLVPQDLQTLRVVFAVLGKGCFGISL--TCLTIYKAELFPTPVRMTADGIL--------HTVGRLGAMMGPLILMSRQALPLLPPLLYGVISIASSLVVLFFLPETQGLPLPDTIQDLESQKSTAAQGNRQEAVTVESTSL |
4GBY Chain:A ((26-479)) | ----------------------------------------------------------------------------------------------------------------------YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY---RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK---IMGNTLATQAVQE-----IKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL-SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG----KTLEELEALWE------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -239884 for 3277 contacts (-73.2/contact) +
2D Compatibility (PS) -41586 + (NN) -13672 + (LL) 9608
1D Compatibility (HY) -29200 + (ID) 5000
Total energy: -319734.0 ( -97.57 by residue)
QMean score : 0.232
|
|
|