Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----MGHHHHHHSHMVVIHPDPGRELSPEEA-------------------HRAGLIDWNMF-----VKLRS--QECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAHY---------------DRYVNKDMSIQEL--AVLVSGQK |
2TMD Chain:A ((490-645)) | RWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2TMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6850 for 695 contacts (9.9/contact) +
2D Compatibility (PS) -11148 + (NN) 3909 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -3739.0 ( -5.38 by residue)
QMean score : 0.018
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