Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGVSYSDGHFLTKSGGVINFRKTRVTSITITILGNYGLRVVNGELQNTPLTFK-------------GADFKSSTLKDELLIPLEGAVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA------------------------
3Q9D Chain:A ((8-182))
---LELEDNVFLLLEGNLKRIFATPIGYTTFREFQNVVFNCANGQQEIANFFFEMLINGKLTQELAPQQKQAAHSLIAEFMMPIRVAKDIHERGEFINFITSDMLTQQERCIFLNRLARVDGQEFLLMTDVQNTCHLIRHLLARLLEAQKNPVGEKNLQEIQEEITSLKNHFDELTKA
General information:
TITO was launched using:
RESULT:
Template:
3Q9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30767 for 810 contacts (-38.0/contact) +
2D Compatibility (PS) -13903 + (NN) 2629 + (LL) -240
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -49331.0 ( -60.90 by residue)
QMean score : 0.051
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9D-query.scw
PDB file :
Tito_Scwrl_3Q9D.pdb
: