Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
2D7C Chain:A ((2-167))
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2D7C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112696 for 1331 contacts (-84.7/contact) +
2D Compatibility (PS) -18303 + (NN) -7322 + (LL) 1384
1D Compatibility (HY) -23200 + (ID) 8050
Total energy: -168187.0 ( -126.36 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2D7C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D7C-query.scw
PDB file :
Tito_Scwrl_2D7C.pdb
: