Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------------------------------------------------------------------------SSSVWGVAFSPDGQT-IASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR--------NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR----NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGH----------------------------------------------------- |
| 3C99 Chain:A ((13-417)) | SFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPCQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYND |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C99.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39494 for 1610 contacts (-24.5/contact) +
2D Compatibility (PS) -22862 + (NN) -17903 + (LL) 0
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -92859.0 ( -57.68 by residue)
QMean score : 0.489
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