Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLLLVFLSLTWLSASAQALVPITWTAYGLTFEAPKGILVEEDTEETFLLNNSRFYITIQSLDSDGMTKSDLKSVLKDYANDDGVKDQSAVQEFELPQFFGTYLKGSCETDHCLYACLMTKAAGSGFYISIIYSKENENIAEKILKSFTMEE
2JNA Chain:A ((1-103))
MKKRIIAAALLATVASFSTLAAEQVS------------------KQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGK---------------------------YYHIIAAREHGPNFEAVAEVYNDATKLEHHHHH------
General information:
TITO was launched using:
RESULT:
Template:
2JNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19306 for 550 contacts (-35.1/contact) +
2D Compatibility (PS) -10836 + (NN) -845 + (LL) 3464
1D Compatibility (HY) 1600 + (ID) 1000
Total energy: -26923.0 ( -48.95 by residue)
QMean score : 0.155
(partial model without unconserved sides chains):
PDB file :
Tito_2JNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JNA-query.scw
PDB file :
Tito_Scwrl_2JNA.pdb
: