Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKH--RGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
1QRZ Chain:A ((547-789))
--DCGK--PQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRP-SSYKVILGA--HQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVLR--------
General information:
TITO was launched using:
RESULT:
Template:
1QRZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162803 for 2076 contacts (-78.4/contact) +
2D Compatibility (PS) -25788 + (NN) -14352 + (LL) 1280
1D Compatibility (HY) -19600 + (ID) 4950
Total energy: -226213.0 ( -108.97 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1QRZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QRZ-query.scw
PDB file :
Tito_Scwrl_1QRZ.pdb
: