Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVTAYLAFVGLLA--SCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGP------VAPFVAAI----PLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYHLQPMHLLSLAVLIVVFSLFMLTFSTSPGQESPVESFIAFLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACL-----GLLVL----------------HDSDRKTGTRNMFSICSAVMVM----ALLAVVGLFTVVRHDAELRVPSPTEEPYAPEL |
| 4ZFV Chain:A ((10-445)) | --NVLDFTVLGLNSGTSMDGIDCALCHFYQK----TPDAPMEFELLEYGEVPLA--QPIKQRVMRMILEDTTSPSELSEVNVILGEHFADAVRQFAAERNVD-LSTIDAIASHGQTIWLLSMPEEGQVKSALTMAEGAILASRTGITSITDFRISDQAAGRQGAPL----IAFFDALLLHHPTKLRACQNIGGIANVCFIPPDVDGRRTDEYYDFDTGPGNVFIDAVVRHFTNGEQEYDKDGAMGKRGKVD----------------QELVDDFLKMPYFQ----LDPPKTTGREVFRDTLAHDLIRRAEAK-------GLSPDDIVATTTRITAQAIVDHYRRYAPSQEID-EIFMC------GGGAYNPNIVEFIQQSYPNT-KIMMLDEAGVPAGAKEAITFAWQGMEALVGRSIPVPTRVETRQHYVLGKVSPGLNYRSVMKKGMAFGGDAQQLPWVSEMIVKKKGKVITNNWAGSHHHH--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4ZFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -394257 for 3389 contacts (-116.3/contact) +
2D Compatibility (PS) -42324 + (NN) -15076 + (LL) 5188
1D Compatibility (HY) -400 + (ID) 3450
Total energy: -450319.0 ( -132.88 by residue)
QMean score : 0.318
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