Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGAGGPRRGEGPPDGGWGWVVLGACFVVTGFAYGFPKAVSVFFRALMRDFDAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLAGGLLASAGMILASFATRLLELYLTAGVLTGLGLALNFQPSLIMLGLY------FERRRPLANGLAA-----AGSPVFLSALSPLGQQLLERFGWRGGFLLLGGLLLHCCACGAVMRPPPGPGPRPRRDSAGDRAGDAPGEAEADGAGLQLREASPRVRPRRRLLDLAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKDAGVPDTDAAFLLSIVGFVDIVARPACGALAGLARLRPHVPYLFSLALLANGLTDLSSARARSYGALVAFCVAFGLSYGMVGALQFEVLMAAVGAPRFPSALGLVLLVEAAAVLIGPPSAGRLVDVLKNYEIIFYLAGSEVALAGVFMAVATNCCLRCAKAAPSGPGTEGGASDTEDAEAEGDSEPLPVVAEEPGNLEALEVLSARGEPTEPEIEARPRLAAESV |
| 1PV6 Chain:A ((279-411)) | --------------------------------------------------------------------------APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV----ILKTLHM---FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA---GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -73788 for 737 contacts (-100.1/contact) +
2D Compatibility (PS) -12559 + (NN) -8275 + (LL) 23388
1D Compatibility (HY) -13600 + (ID) 1750
Total energy: -86584.0 ( -117.48 by residue)
QMean score : 0.175
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