Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPGRTQIKLDPRYTADLLEVLKTNYGIPSACFSQPPTAAQLLRA-------LGPVELALTSILTLLALGSIAIFLEDAVYLYKNTLCPIKRRTLLWKSSAPTVVSVLCCFGLWIPRSLVLV--EMTITSFYAVCFY----LLMLVMVEGFGGKEAVLRTLRDTPMMVHTGPCCCCCPCCPRLLLTRKKLQLLMLGPFQYAFLKITLTLVGLFLVPDGIYDPA--DISEGSTALWINTFLGVSTLLAL-----WTLGIISRQARLHLGEQNMGAKFALFQVLLILTALQPSIFSVLANGGQ----IACSPPYSSKTRSQV---MNCHLLILETF-LMTVLTRMYYRRKDHKVGYETFSSPDLDLNLKA--------------------------------- |
| 3LDF Chain:A ((1-385)) | ----MIKLMVGSFAEKKLKR---GVQLLSSRDYPNLNLDNQVVQLYSDADIFLGTAYLSKQNKGVGWLISPKKVSL-NVTYFIKLFQWSKDKRKNFAHSKLTTAYRLFNQDGDSFGGVTIDCYGDFVLFSWYNSFVYQIRDEIVAAFRQVYPNFLGAYEKIRFNVSAHLYGQ-------------EAPEQFLILENGISYNVFLNDGLMTGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQDESSNYLKVFTIKV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -278809 for 2425 contacts (-115.0/contact) +
2D Compatibility (PS) -33023 + (NN) -2624 + (LL) 1276
1D Compatibility (HY) -3600 + (ID) 1950
Total energy: -318730.0 ( -131.44 by residue)
QMean score : 0.184
|
|
|