Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALLVDRVRG--------------------------HWRIAAGLLFNLLVSICIVFLNKWIYVYHGFPNMSLTLVHFVVTWLGLYICQKLDIF----APKSLPPSRLLLLALSFCGFVVFTNLSLQNNTIGTY-QLAKAMTTPVII----------------AIQTFC-Y-QKTFSTRIQLTLIPITLGVILNSYYDVKFNFLGMVFAALG-----VLVTSLYQVWVGAKQHELQVNSMQLLYYQAP----------MSSAMLLVA-VPFFEPVFGEGGIFGPWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSP----VTYNMFGHFKFCITLFGGYVL-FKDPLSINQALGILCTL--FGI-LAYTHFKLSEQEGSRSKLAQRP---------- |
| 4OL8 Chain:A ((24-461)) | PVWLQQKYREIIRNDLPPPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIV-----PSKSPCSSPVVLVPKTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSES-PEEHWKHLDTVLERLKNENLIVKKKKCKFEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPITEKQDKAIDKLKDAPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLEYPAGELELLGIIKALHHFRYMLHGKHFTLRTNHARRVQRWLDDLATYDFTLEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OL8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234312 for 1921 contacts (-122.0/contact) +
2D Compatibility (PS) -32139 + (NN) -2969 + (LL) 380
1D Compatibility (HY) -2400 + (ID) 2300
Total energy: -273740.0 ( -142.50 by residue)
QMean score : 0.169
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