Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKTNKIIFIVFIVIFIGLSYRHFTNTDKARMEISSLSSIDVFKFNSFSKFSNDKIGVIYDEEKLSKFKVIMNSLDTSEGIKKIEVPKDANIESFKYSYHIQPNLKYVEDNNVYDGYFLLYILVGDSEGKSYIIFSGTELSYVLDKNNTNILKEIFLNVKKQQ- |
| 1GNU Chain:A ((1-117)) | MKF----------------VYKEEHPFEKRRSEGEKIRKK-----------YPDRVPVIVEKAPKARIGDLDK--------KKYLVPSDLTVGQFYFLIRKRIHLRAEDA---------LFFFVNNVIPPTS---ATMGQLYQEHHEEDFFLYIAYSDESVYGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GNU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 22921 for 829 contacts (27.6/contact) +
2D Compatibility (PS) -12052 + (NN) -399 + (LL) 3728
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: 9998.0 ( 12.06 by residue)
QMean score : 0.108
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