Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGGHPG--NSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRV--RESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
4K3J Chain:A ((1-221))
-------------------VVNGIPTRTNIGWMVSLRYRN-KHICGGSLIKESWVLTARQCFPS--RDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKW--------------
General information:
TITO was launched using:
RESULT:
Template:
4K3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157439 for 1804 contacts (-87.3/contact) +
2D Compatibility (PS) -24135 + (NN) -13682 + (LL) 2304
1D Compatibility (HY) -16400 + (ID) 4900
Total energy: -214252.0 ( -118.76 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4K3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K3J-query.scw
PDB file :
Tito_Scwrl_4K3J.pdb
: