Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFNHR-TTSDMWLYRAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEAR---TISFGKNGEEPKLAFEDVDAAELYPCVMFYSS-----NPGEKVK-------ICDMQMR--------
3TOJ Chain:A ((275-511))
SGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDT-AARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDGSSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEH
General information:
TITO was launched using:
RESULT:
Template:
3TOJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73243 for 1203 contacts (-60.9/contact) +
2D Compatibility (PS) -17046 + (NN) -9698 + (LL) 104
1D Compatibility (HY) -4800 + (ID) 1550
Total energy: -106233.0 ( -88.31 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3TOJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TOJ-query.scw
PDB file :
Tito_Scwrl_3TOJ.pdb
: