Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQ-HASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD--VGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI |
| 4C9H Chain:B ((24-309)) | --------LIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADSK-----GARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK-----------LASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80267 for 2002 contacts (-40.1/contact) +
2D Compatibility (PS) -27123 + (NN) 3957 + (LL) 1320
1D Compatibility (HY) -28000 + (ID) 7750
Total energy: -137863.0 ( -68.86 by residue)
QMean score : 0.198
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