Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEVKSLLMVMATLTIAGCSQNEMTEMNPDTNRTIGLDVYTEVQTRGTETTTSTLKANAGFGIFAYQTSSAGWNSEKGNTTPNFMYNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWKDMIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITNKEVSLPKNTFKKGTKHTYVLTIKMNAIKITVEDNMEGWTDDSDSDINVEK |
| 1D3V Chain:A ((6-313)) | ----------KPIEIIGAPFSKGQ------------------PRGGVEKGPAALRKAG----LVEKLKETEYNVRDHGDLAFVDVPN--DSPFQIV--KNPRSVGKANEQLAAVVAETQKNGT-----ISVVLGGDHSMAIGSISGHARVHPD---LCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPD-VPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFS---MTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDG---LDPVFT-------PATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIM-EVNPTLGKTPEEVTRTVNTAVALTLSCF------------GTKREGNHK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 94822 for 2826 contacts (33.6/contact) +
2D Compatibility (PS) -31620 + (NN) 673 + (LL) 3936
1D Compatibility (HY) -5600 + (ID) 1900
Total energy: 60311.0 ( 21.34 by residue)
QMean score : 0.045
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