Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK
2VYI Chain:A ((95-193))
-----------------KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE-----------
General information:
TITO was launched using:
RESULT:
Template:
2VYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5495 for 765 contacts (7.2/contact) +
2D Compatibility (PS) -10979 + (NN) -5619 + (LL) 2344
1D Compatibility (HY) -5600 + (ID) 1950
Total energy: -16309.0 ( -21.32 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_2VYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VYI-query.scw
PDB file :
Tito_Scwrl_2VYI.pdb
: