Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMRVYSLLFMMLFALSIGANAQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCNADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPND-DVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEKSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVTTVRNEMQVF |
1DMU Chain:A ((1-299)) | -----MYNLHREKIFMSYNQNKQYLEDNPEIQEKIELYGLNLLNEVISDNEEEIRADYNEANFLHPFWMNYPPLDRG--------KMPKGDQIPWIEVGEKAVGSKLTRLVSQREDITVREIGLPTGPDERYLLTSPTIYSLTNGFTDSIMMFVDIKSVGPRDSDYDLVLSPNQ-VSGNGDWAQLEGGIQNNQQTIQGPRS-SQIFL----------PTIPPLYILSD------------------------GTIAPVVHL----FIKPIYAMRSLTK---------------------------GDTGQSLYKIKLASV----PNGLGLFCNP------------GYAF--------------DSAYKFLFRPGKD----------DRTKSLLQKRVRVDLRVLDK-----IGPRVMTIDMDK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69107 for 2382 contacts (-29.0/contact) +
2D Compatibility (PS) -31915 + (NN) -7993 + (LL) 7140
1D Compatibility (HY) -12000 + (ID) 2650
Total energy: -116525.0 ( -48.92 by residue)
QMean score : 0.119
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