Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPV-AGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYN-----GKTLTQCLKMETATSISFTAPSAGKLTLVFAEAAATAKVDGNK-VTASNGIITVDLAQGAHTITKADACNLFYMEYAAHHHHHH
2QV3 Chain:A ((417-507))
-GPLRVNNQVGGYALAGSSANFEFKAG-VDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDF--SGVTNKVNINKLITASTNV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QV3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15534 for 555 contacts (-28.0/contact) +
2D Compatibility (PS) -8940 + (NN) -1810 + (LL) 3120
1D Compatibility (HY) -2400 + (ID) 1500
Total energy: -27064.0 ( -48.76 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_2QV3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QV3-query.scw
PDB file :
Tito_Scwrl_2QV3.pdb
: