Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKH--RGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
4DUR Chain:A ((548-789))
---CGK--PQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRP-SSYKVILGA--HQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET---FGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR--------
General information:
TITO was launched using:
RESULT:
Template:
4DUR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145089 for 1937 contacts (-74.9/contact) +
2D Compatibility (PS) -25620 + (NN) -13864 + (LL) 1288
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -207785.0 ( -107.27 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4DUR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUR-query.scw
PDB file :
Tito_Scwrl_4DUR.pdb
: