Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATMAFHPMLCRLELSVSAAPPASPIDATLLRSLITSVLNSSWVDLGGNTANEKVLCAIGLIEAFCRERVIPPTSNSFNTSVTYHIMVEDLDPDDLGN---IQLINKPLLSLEGDLKVLGSYQLTFQTIPGHSEPRSMTDNGIYHSDSPFFQIALGHALLGTGKIYDHITRALRVAPITIAPEKRKEPLSSYMV
1OZ9 Chain:A ((8-148))
------------KNRVLVKLKKRKVRKDKIEKWAELALSAL-----------------------------GLNNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQARELG-------HSLEEEVKRLIVHGIVHLLG-YDHEKGGEEEKKFRELENYVLSKLSK---
General information:
TITO was launched using:
RESULT:
Template:
1OZ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46780 for 1032 contacts (-45.3/contact) +
2D Compatibility (PS) -14264 + (NN) 2298 + (LL) 4648
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -56998.0 ( -55.23 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_1OZ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OZ9-query.scw
PDB file :
Tito_Scwrl_1OZ9.pdb
: