Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGHTQQPSGRGNPRPAPSPSPVPGTVPGASERVALKKEIGLLSACTIIIGNIIGSGIFISPKGVLEHSGSVGLALFVWVLGGGVTALGSLCYAELGVAIPKSGGDYAYVTEIFGGLAGFLLLWSAVLIMYPTSLAVISMTFSNYVLQPVFPNCIPPTTASRVLSMACLMLLTWVNSSSVRWATRIQDMFTGGKLLALSLIIGVGLLQIFQGHFEELRPSNAFAFWMTPSVGHLALAFLQGSFAFSGWNFLNYVTEEMVDARKNLPRAIFISIPLVTFVYTFTNIAYFTAMSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVALSTFGGINGYLFTYSRLCFSGAREGHLPSLLAMIHVRHCTPIPALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLLLLRWRRPALHRPIKVNLLIPVAYLVFWAFLLVFSFISEPMVCGVGVIIILTGVPIFFLGVFWRSKPKCVHRLTESMTHWGQELCFVVYPQDAPEEEENGPCPPSLLPATDKPSKPQ |
| 3GD9 Chain:A ((48-77)) | -------PAGGNPPTPAPDAS-IPGPAPGRSTTIQIPKFSGRIYFSYGRKMEFRLTTGGLVQPAVQNPTDPNRDILFNWSEYTLNDSGLWINSTQVDMFSAPYTVGVRRGDGTTLSTGKLRPGGYNGVFNALRGQSGGWANLIQTRSDGTVLRALSPLYGVETGALPASVMDDYINRVWNKYTGTDLIVTPFADRPDVRYTGRVSGGVLRFTDGSGAVVTTFQKPDASSVFGCHRLLDAPVRGPISRTLCAGFNRTTLLANPHQPDRSAAGFYQEPVTNHYARIIHAHMADGKAYGFAFDDVGHHESLVHDGDPRGASLTLDPFD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2509 for 83 contacts (30.2/contact) +
2D Compatibility (PS) -3417 + (NN) -5278 + (LL) 14588
1D Compatibility (HY) -800 + (ID) 650
Total energy: 6952.0 ( 83.76 by residue)
QMean score : 0.901
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