Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAV----QQQEATLAIRPVGQGIGMPDGFSVWHHLDANGIRFKSITPQKDGLLIKFDSTAQGAAAK-EVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
2RBG Chain:A ((3-126))
YKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQYQELVTLIREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYCDDENK---VFMSKIVDNLPTAIKRNLIKDFCRKLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2RBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22475 for 761 contacts (-29.5/contact) +
2D Compatibility (PS) -11819 + (NN) -3608 + (LL) 872
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -39880.0 ( -52.40 by residue)
QMean score : -0.076
(partial model without unconserved sides chains):
PDB file :
Tito_2RBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RBG-query.scw
PDB file :
Tito_Scwrl_2RBG.pdb
: