Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEVKSLLMVMATLTIAGCSQNEMTEMNPDTNRTIGLDVYTEVQTRGTETTTSTLKANAGFGIFAYQTSSAGWNSEKGNTTPNFMY-NEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWKDMIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPDVNLGTDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITNKEVSLP---KNTFKKGTKHTYVLTIKMNAIKITVEDNMEGWTDDSDSDINVEK----- |
2CU2 Chain:A ((1-335)) | MKTYALVM----------AGGRGERLWP-LSREDRPKPFLPLFEGKT----------------LLEATLERLAPLVPPERTLLAVRRDQEAVARPYADGIRLLLEPLGRDTAGAVLLGVAEALKE-GAERLLVLPADH---------YVGDDEAYREALATMLEA-------AEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGA-SLEEVYAGLPKISIDYGVMEKAERVRVVLGR-----FPWDDVG---NWRALERVFSQDPHENVVLGEGRHVALDTFGCVVYADRGVVATLGVSGLVVAKVGDEVLVVPKDWAREVREVVKRLEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CU2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 72762 for 2802 contacts (26.0/contact) +
2D Compatibility (PS) -34220 + (NN) 704 + (LL) 3500
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: 34546.0 ( 12.33 by residue)
QMean score : 0.126
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