Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEELSGKPLSYAEKEKLKEKLAFLKKEYSRTLARLQRAKRAEKAKNSKKAIEDGVPQPEALEHHHHHH--------------------
1FAF Chain:A ((1-79))
MD----RVLSRADKERLLELLK-LPRQLWGDFGRMQQAYKQQSLLLH----PDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTGFQ
General information:
TITO was launched using:
RESULT:
Template:
1FAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 35242 for 339 contacts (104.0/contact) +
2D Compatibility (PS) -6591 + (NN) -5275 + (LL) 688
1D Compatibility (HY) -2800 + (ID) 700
Total energy: 20564.0 ( 60.66 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1FAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FAF-query.scw
PDB file :
Tito_Scwrl_1FAF.pdb
: