Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GRIP--SPPSKTSLD---IAEELQNDKGVSFAFQA------REEELGAFTKR--TLFAYSGDGLTGPFKAPASAELSSFLTA---------HPKGRWLIAFPL-GTGIVSVDEGILTLE-----ISRSLPEVGSGSSFYLTEK
2JHB Chain:A ((1-143))
GSMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDALAQQ
General information:
TITO was launched using:
RESULT:
Template:
2JHB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23482 for 762 contacts (-30.8/contact) +
2D Compatibility (PS) -12130 + (NN) -1988 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -42300.0 ( -55.51 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_2JHB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JHB-query.scw
PDB file :
Tito_Scwrl_2JHB.pdb
: