Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
3BFK Chain:A ((4-174))
YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNL------GVEFATKSIQLNNKIIKAQIWDTA-------ITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQ----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3BFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110300 for 1220 contacts (-90.4/contact) +
2D Compatibility (PS) -17312 + (NN) -6514 + (LL) 1772
1D Compatibility (HY) -21600 + (ID) 5800
Total energy: -159754.0 ( -130.95 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3BFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BFK-query.scw
PDB file :
Tito_Scwrl_3BFK.pdb
: