Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
RKVDYSTFLQEVNNDQVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGE
1YFD Chain:A ((2-36))
----YTTFSQ-TKNDQLKEPMFFGQPVNVARYDQQKYDIF----------------------
General information:
TITO was launched using:
RESULT:
Template:
1YFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11965 for 149 contacts (80.3/contact) +
2D Compatibility (PS) -3496 + (NN) 150 + (LL) 1764
1D Compatibility (HY) -2400 + (ID) 650
Total energy: 7333.0 ( 49.21 by residue)
QMean score : -0.015
(partial model without unconserved sides chains):
PDB file :
Tito_1YFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFD-query.scw
PDB file :
Tito_Scwrl_1YFD.pdb
: