Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLLLVFLSLTWLSASAQALVPITWTA--YGLTFEAPKGILVEEDTEETFLLNNSRFYITIQSLDSDGMTKSDLKSVLKDYAND----DGVKDQSAVQEFELPQFFGTYLKGSCETDHCLYACLMTKAAGSGFYISIIYSKENENIAEKILKSFTMEE-
1NP6 Chain:A ((5-174))
MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEE-IAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLD--VALLDINDVEGLADFVVEWMQKQNG
General information:
TITO was launched using:
RESULT:
Template:
1NP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30037 for 892 contacts (-33.7/contact) +
2D Compatibility (PS) -15613 + (NN) 1796 + (LL) 368
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -46886.0 ( -52.56 by residue)
QMean score : 0.175
(partial model without unconserved sides chains):
PDB file :
Tito_1NP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NP6-query.scw
PDB file :
Tito_Scwrl_1NP6.pdb
: