Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MAHHHHHHLIPAEQLPPLKEEEVIEKIENDACIQKSLEKIRALSKLIYNNPEILEQDISHINANPKMGRE---LSERIINSP---KSIGRLKGR-KIGYIKSQKY-----KI-SEQNAKILSNEIFNYADKVSNIR-CTIMREHKA-K-GRRLLQTVKMPS
1VK9 Chain:A ((2-148))
GSDKIHHHHHHV------EKNLLRSALKIFEK-----------KDLSLLAYSGRSIFESKDSGLKPVVELFKRFDNLEGSLVIDKMVGKAAASFLLKMKPDHIHAKVISKPALKLMNEYGQSFSYDEKIPFVLGKDGKSMCPFEKLVLEMDDPEEIIRIVLSKF
General information:
TITO was launched using:
RESULT:
Template:
1VK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 15050 for 875 contacts (17.2/contact) +
2D Compatibility (PS) -13274 + (NN) -1677 + (LL) 1640
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -3811.0 ( -4.36 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1VK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK9-query.scw
PDB file :
Tito_Scwrl_1VK9.pdb
: