Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPAGVDDYSYLVAADDQDGTIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE
3PCQ Chain:M ((1-31))
--MALTDTQVYVALVIALLPAVLAFRLSTELYK--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1742 for 115 contacts (-15.1/contact) +
2D Compatibility (PS) -3171 + (NN) 81 + (LL) 5808
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -2624.0 ( -22.82 by residue)
QMean score : 0.013
(partial model without unconserved sides chains):
PDB file :
Tito_3PCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PCQ-query.scw
PDB file :
Tito_Scwrl_3PCQ.pdb
: