Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGA-FVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH |
2LX0 Chain:A ((5-30)) | -----------------------------------------------------------------IWEVIAGLVALLTFLAFGFWLFKYLQKK-------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LX0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8690 for 108 contacts (-80.5/contact) +
2D Compatibility (PS) -2472 + (NN) 210 + (LL) 10936
1D Compatibility (HY) -2400 + (ID) 200
Total energy: -2616.0 ( -24.22 by residue)
QMean score : -0.248
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