Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGKPATRKGPDFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNTTQQQGLSNASTEGPVADAFNNSSISIKEFDTKASVYQWSPETQGIIFSSINYGIILTLIPSGYLAGIFGAKKMLGAGLLISSLLTLFTPLAADFGVILVIMVRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTTIAGSGSAFGSFIILCVGGLISQALSWPFIFYIFGSTGCVCCLLWFTVIYDDPMHHPCISVREKEHILSSLAQQPSSPGRAVPIKAMVTCLPLWAIFLGFFSHFWLCTIILTYLPTYISTLLHVNIRDSGV---LSSLPFIAAASCTILGGQLADFLLSRNLLRLITVRKLFSSLGLLLPSICAVALPFVASSYVITIILLILIPGTSNLCDSGFIINTLDI-APRYASFLMGISRGFGLIAGIISSTATGFLISQVGPVY |
| 3WDO Chain:A ((38-365)) | --------------------------------------------------------------------------------MALQGASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALS--DSIWGIILGRALQGSGA--IAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNR---ESG-------------MVKGSFSKVLAEPRLLKLNFGIMCLHMLLMSTFVALPGQLADA-GFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQV----------FVFCVGLIV--VAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3WDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -298401 for 2560 contacts (-116.6/contact) +
2D Compatibility (PS) -31432 + (NN) 12314 + (LL) 7076
1D Compatibility (HY) -14400 + (ID) 2300
Total energy: -327143.0 ( -127.79 by residue)
QMean score : 0.135
|
|
|