Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLAFMTFSRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLE-WYGWQSIFYFSGGLTLLWVWYVYRYLLS-EKDLILAL-GVLAQSRPVSRHNRV-PWRRLFRKPAVWAAVVSQLSAACSFFILLSWLPTFFEET--FPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHT--SSFCESVVFASASIGLQ-TFNHSGISVNIQDLAP-SCAGFLFGVANTAGALAGV-VGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTF-LVFGQAQRVDLSSTHEDL |
| 1PW4 Chain:A ((7-448)) | --PAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-----TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI-VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -296854 for 3544 contacts (-83.8/contact) +
2D Compatibility (PS) -41479 + (NN) -261 + (LL) 1544
1D Compatibility (HY) -24800 + (ID) 3550
Total energy: -365400.0 ( -103.10 by residue)
QMean score : 0.241
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