Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
3CPJ Chain:B ((10-207))
YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNM------GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD-SKSSSYENCNHWLSELRENAD--VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL-SENVDKAFEELINTIYQKV-------------------PTISL-----
General information:
TITO was launched using:
RESULT:
Template:
3CPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114906 for 1272 contacts (-90.3/contact) +
2D Compatibility (PS) -17849 + (NN) -5889 + (LL) 792
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -163152.0 ( -128.26 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_3CPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CPJ-query.scw
PDB file :
Tito_Scwrl_3CPJ.pdb
: